VISDB Viral Integration Site DataBase

VIS ID

TVIS10018530

Fusion event

HBV-JARID2 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1758

End

1917

Integrated sequence

GTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT

Chromosome

chr6

Cytoband

p22.3

Reference genome

Start

End

15298261/15298030 (Hg38)

Location type

Intron1

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-204-5p ; hsa-mir-130b-3p ; hsa-mir-26b-5p ; hsa-mir-24-3p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-615-3p ; hsa-let-7c-5p ; hsa-mir-7-5p ; hsa-mir-218-5p ; hsa-mir-6792-5p ; hsa-mir-340-5p ; hsa-mir-3171 ; hsa-mir-383-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-424-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-195-5p ; hsa-mir-4276 ; hsa-mir-5190 ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-4709-5p ; hsa-mir-421 ; hsa-mir-3678-3p ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-2467-3p ; hsa-mir-6501-3p ; hsa-mir-2278 ; hsa-mir-513b-3p ; hsa-mir-503-5p ; hsa-mir-4477b ; hsa-mir-541-5p ; hsa-mir-1229-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-197-3p ; hsa-mir-3115 ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-548au-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-6809-5p ; hsa-mir-31-5p ; hsa-mir-6868-5p ; hsa-mir-3128 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4704-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-6854-5p ; hsa-mir-4681 ; hsa-mir-5583-3p ; hsa-mir-4796-3p ; hsa-mir-148a-3p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-19a-3p

Nearest miRNA

hsa-mir-3691/Upstream/4858236; hsa-mir-10398/Downstream/843526;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/49219, chr6-CpG: 51/Downstream/198543

Upstream sequence

cctcagtttcccaaaactgatgaaaggcgtcaaattctcaagaagctccaggaattccaagaaagagaaatgctacgaaatccatacctggccatcagag

Downstream sequence

GTTTTCCTTTCCTCTTCTTAGGAGCTCTTTAGCAGAAACATAGTAGCCAAGACATTTTAGGGAGCTTACCCAACTTTTTCTTGATATGTAGCAATAGAAA