Basic Information
VIS ID
TVIS10018533
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1245
End
1783
Integrated sequence
CCTTTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCC
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37.55
Start
66728175/66018282 (Hg38)
End
66728175/66018282 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/8628070; hsa-mir-10524/Downstream/5358678;
Nearest TSS
ENST00000381078/Upstream/311057; ENST00000449928/Downstream/1871057;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/230142, chr6-CpG: 21/Downstream/76455
Nearby gene
SLC25A51P1
Upstream sequence
tccctgaaaaggacatgaactcattcatttttatagctgcatagtattccatggtatatatgtgccacattttctttatccagcctattgttgatgagca
Downstream sequence
GTACACTGGCGACTGAGAATAACTAGATGTCCCCTATATCTAGGATGCTTAAACTGTGACATGCATTTAACTTAAGATATAAGCCCTTACTTTTTGGAGA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate