Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018535
Fusion event
HBV-ZNF800 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1354
End
1789
Integrated sequence
CCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGC
Host Sequence
Chromosome
chr7
Cytoband
q31.33
Reference genome
End
126984275/127344221 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-27a-3p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-4473 ; hsa-mir-513a-5p ; hsa-mir-4671-3p ; hsa-mir-27b-3p ; hsa-mir-216a-3p ; hsa-mir-3681-3p ; hsa-mir-144-3p ; hsa-mir-454-3p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-330-3p ; hsa-mir-6835-3p ; hsa-mir-3591-5p ; hsa-mir-153-5p ; hsa-mir-4680-5p ; hsa-mir-519d-5p ; hsa-mir-3145-5p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-4326 ; hsa-mir-1284 ; hsa-mir-8067 ; hsa-mir-4666a-3p ; hsa-mir-6508-5p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-3680-5p ; hsa-mir-4803 ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-10525/Upstream/286037; hsa-mir-10399/Downstream/737640;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/90070, chr7-CpG: 77/Downstream/3368
Nearby gene
Upstream sequence
tagatggctgctgaggccatcatccaaaacagaaggagatacacattggctaagagaagtgtttgattttattgatttagaggcagggtcttgctctgtc
Downstream sequence
ataaatagcttgaccccagaaggagtagccactaataaaaaatgatggaaaaatgatcccattcaaatgcaacaaagaaatgaaatatctaacaatacaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.