Basic Information
VIS ID
TVIS10018546
Fusion event
HBV-C16orf47 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1826
Integrated sequence
AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTT| |TCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAA
Host Sequence
Chromosome
chr16
Cytoband
q22.3
Reference genome
GRCh37.55
Start
73417948/73384049 (Hg38)
End
73417948/73384049 (Hg38)
Location type
Intronic
Target gene
C16orf47
Nearest miRNA
hsa-mir-1225/Upstream/3353627; hsa-mir-11401/Downstream/3484887;
Nearest TSS
ENST00000527434/Upstream/151287; ENST00000561875/Downstream/2756;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/317157, chr16-CpG: 74/Downstream/912586
Nearby gene
LINC01568
Upstream sequence
AAGGTTCTGCTTTCCACCAAACCTTCTTCGGTCTGGGCCCTCCCTTAGCAACCCTGGGGCTTTAGACTCTCTCTCCACCAATCCCTGATGACCCCGGTGG
Downstream sequence
CTAATAATCCATCTGGATATGTAGACCCCCAAACAGAGGCAACAACCATGTGAATTCAATTCCTGCCATGATGTCAGATGCTCTTGGCcaggaattggca
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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