Basic Information
VIS ID
TVIS10018548
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1598
Integrated sequence
CCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCT| |CTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCT
Host Sequence
Chromosome
chr20
Cytoband
p12.3
Reference genome
GRCh37.55
Start
7921273/7940626 (Hg38)
End
7921273/7940626 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/568934; hsa-mir-1-1/Downstream/2709010;
Nearest TSS
ENST00000382410/Upstream/152; ENST00000607924/Downstream/73304;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/1170316, chr20-CpG: 96/Downstream/78516
Nearby gene
TMX4
Upstream sequence
gggttcatcatcacgacctaattacctcccaaagacccaaccttctaacaccatcaccttgggggttgggatttcaacatacgaattttggccaagacac
Downstream sequence
GAACACCGAAGTCACTATCTGCCAAAGAACACCAAAGTTGAGGTTGGGAAGGCAGCAGAAGGTGATTAGGTGTCTATCACATTAAAAAGGGGAAAGGAAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate