Basic Information
VIS ID
TVIS10018550
Fusion event
HBV-LOC105373134 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37.55
Start
13181386/13163267 (Hg38)
End
13181386/13163267 (Hg38)
Location type
Intronic
Target gene
LOC105373134
Nearest miRNA
hsa-mir-3690-1/Upstream/1844581; hsa-let-7f-2/Downstream/427025;
Nearest TSS
ENST00000429181/Upstream/69607; ENST00000431486/Downstream/140125;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/186787, chrX-CpG: 52/Downstream/215502
Nearby gene
FAM9C
Upstream sequence
ttgggtacactatttcagtggaaaggtctgaaactcaagtcttgccattcagattctcttgtcccacagggtaatcccttgatgtggtgctctccatatt
Downstream sequence
AACAACATTAGCAGACTTTGCTTGGGGGAAATCAGACCTTGGATTCCCCTGCCTCCCAACCCCCAACCTCACCAAATTAGTATATTATCAGGTTCCATCT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate