EPHA10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018551
Fusion event
HBV-EPHA10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1596
Integrated sequence
CTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCAC| |CTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGAC
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37.55
Start
38194245/37728573 (Hg38)
End
38194245/37728573 (Hg38)
Location type
Intron10
Target gene
EPHA10
Nearest miRNA
hsa-mir-12136/Upstream/227579; hsa-mir-101-1/Downstream/360658;
Nearest TSS
ENST00000473358/Upstream/6716; ENST00000532512/Downstream/2921;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/35659, chr1-CpG: 93/Downstream/23945
Upstream sequence
ccagaaatgaaataataaactaatcaaatgggtttaaggacatattagaaagactagtgaacacaaaaacaggtccaataaaaatattcaaactgaacat
Downstream sequence
CACAGGTAAATGGAGAATTGGTATGCAAGAGCATCTTCTCAAGACTAGCATGAAACACTTCAAATGCATAGGAAaaagccatagagtggtacagttggaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate