Basic Information
VIS ID
TVIS10018552
Fusion event
HBV-LOC105372898 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1672
Integrated sequence
CGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGA| |CTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTG
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37.55
Start
209695401/209522056 (Hg38)
End
209695401/209522056 (Hg38)
Location type
Intronic
Target gene
LOC105372898
Nearest miRNA
hsa-mir-101-1/Upstream/89814; hsa-mir-1182/Downstream/101388;
Nearest TSS
ENST00000473358/Upstream/150001; ENST00000423146/Downstream/25524;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/289928, chr1-CpG: 16/Downstream/103748
Nearby gene
CAMK1G
Upstream sequence
TAAGTCCCATTCTCCAACTAAAGTTTATGGTGCCTAATTCCGAAGCAAATTTAAGCAAGTTCTGACTACACAAACTCCTTATGTTTCCTTTCATAAAGCC
Downstream sequence
attctttttacgactgaataatattccattgtctgtataccacattttgtgaacccattcatctgttgatggacacttgggctcttcaacctggtaacta
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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