Basic Information
VIS ID
TVIS10018563
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
456
Integrated sequence
AACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTAT| |CAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGT
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37.55
Start
135048250/134036007 (Hg38)
End
135048252/134036009 (Hg38)
Nearest miRNA
hsa-mir-1204/Upstream/989426; hsa-mir-10400/Downstream/764511;
Nearest TSS
ENST00000518652/Upstream/149511; ENST00000505776/Downstream/284438;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/463291, chr8-CpG: 201/Downstream/427966
Nearby gene
LOC101927822
Upstream sequence
AGATCTAAACCAGTATCATTTGGTTTATCAGAGTGTAATCTGGGACAGTTTTCCTCAAGGTAAATTTGATATTCTTCTTGAGCCAGTTGGACACTGCATT
Downstream sequence
AAACCATGTGGAAGATTGACCAGAGGGGCAATGCTAAAGGCAGAATGGTTATTGAAATGGCCTGGAGAAGCACTATTGAGGAACTGAAATGGGAAAGGAA
Target sequence
AG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate