Basic Information
VIS ID
TVIS10018576
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1344
Integrated sequence
ACCTTTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTG| |TTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCT
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37.55
Start
129619160/128606914 (Hg38)
End
129619160/128606914 (Hg38)
Nearest miRNA
hsa-mir-1204/Upstream/456726; hsa-mir-10400/Downstream/877143;
Nearest TSS
ENST00000518652/Upstream/510395; ENST00000519048/Downstream/359087;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/756936, chr8-CpG: 122/Downstream/1332212
Nearby gene
LINC00824
Upstream sequence
CAAGCCACTTGCTTTTCCCAAAATAACTAAGAAAAGGGAGAAAAAAAATGAGTACAGAGGCCATGCTAGAAGACATAGATAAAATATTAAGTCTTAAGAA
Downstream sequence
TTCTTCTGTTCTCACACTTAAGAAAAATATTGATTAGTACATGGAGTTAGAACCTCATGATAATGCCCTAGAAGAAAGATCATCGGTTTCATTTGGATTA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate