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VISDB
Viral Integration Site DataBase
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TVIS10018581
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018581
Fusion event
HBV-SUZ12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1440
End
1691
Integrated sequence
CGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGAC
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37.55
Start
30306550/31979531 (Hg38)
End
30306550/31979531 (Hg38)
Location type
Intron8
Target gene
SUZ12
miRNAs that regulate target gene
hsa-mir-101-3p
;
hsa-mir-19a-3p
;
hsa-mir-375
;
hsa-mir-155-5p
;
hsa-mir-138-5p
;
hsa-mir-21-5p
;
hsa-mir-30c-5p
;
hsa-let-7e-5p
;
hsa-mir-128-3p
;
hsa-mir-200b-3p
;
hsa-mir-571
;
hsa-mir-548d-3p
;
hsa-mir-548h-3p
;
hsa-mir-548z
;
hsa-mir-548ac
;
hsa-mir-6505-5p
;
hsa-mir-548bb-3p
;
hsa-mir-19b-3p
;
hsa-mir-302a-3p
;
hsa-mir-302b-3p
;
hsa-mir-302c-3p
;
hsa-mir-302d-3p
;
hsa-mir-372-3p
;
hsa-mir-373-3p
;
hsa-mir-520e
;
hsa-mir-520a-3p
;
hsa-mir-520b
;
hsa-mir-520c-3p
;
hsa-mir-520d-3p
;
hsa-mir-302e
;
hsa-mir-3185
;
hsa-mir-487b-3p
;
hsa-mir-200c-3p
;
hsa-mir-423-3p
;
hsa-mir-548x-3p
;
hsa-mir-548j-3p
;
hsa-mir-548aq-3p
;
hsa-mir-548am-3p
;
hsa-mir-548aj-3p
;
hsa-mir-548ah-3p
;
hsa-mir-548ae-3p
;
hsa-mir-140-3p
;
hsa-mir-216a-3p
;
hsa-mir-3681-3p
;
hsa-mir-514b-5p
;
hsa-mir-513c-5p
;
hsa-mir-942-5p
;
hsa-mir-372-5p
;
hsa-mir-371a-5p
;
hsa-mir-616-5p
;
hsa-mir-373-5p
;
hsa-mir-371b-5p
;
hsa-mir-141-5p
;
hsa-mir-4662b
;
hsa-mir-4647
;
hsa-mir-4426
;
hsa-mir-320a
Nearest miRNA
hsa-mir-1180/Upstream/404010; hsa-mir-10226/Downstream/370578;
Nearest TSS
ENST00000595228/Upstream/13836;
ENST00000578106/Downstream/14822;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/42035
,
chr17-CpG: 114/Downstream/27413
Nearest cancer related gene
SUZ12
(TSG, No orient, 0)
Upstream sequence
TGATACTTATATTTTTCATTATCTTTTTCTTTTACAAGTTGCATGATATCTCAGAATCGGAATTTCTAACTGAAGCTGAAATCATTTGTGATGTTGTATG
Downstream sequence
cccccagtataggcctgtagttttgcagaatgtatctcaattaggacttctgtggtgatttcctcttgattagcttcaggttaaatatttttggcaggga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Sample Information
×
Sample name
P16D
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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