Basic Information
VIS ID
TVIS10018594
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37.55
Start
112713443/112170821 (Hg38)
End
112713443/112170821 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/2571854; hsa-mir-11399/Downstream/290949;
Nearest TSS
ENST00000473358/Upstream/180285; ENST00000502356/Downstream/189707;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/179670, chr1-CpG: 25/Downstream/225052
Nearby gene
LINC01750
Upstream sequence
CCTAATCCCCACCCCTGGGTTCAGACTTCTGTGGGACCTCTCATCTTCCCTTCTTTCTCTCCACAGTTCCACAGCCCCTGAACCCCTTGCCCTGAGACTT
Downstream sequence
AGACACCTCCTGTGTGAATCCGCCCACAGTACAAAATGCTTATATAGTGTCGAGACAGATGAGTAAATATCCATCTGGTGAGAGAGTACGTTATCAATGT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate