DNM3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018595
Fusion event
HBV-DNM3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1818
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr1
Cytoband
q24.3
Reference genome
GRCh37.55
Start
172120476/172151336 (Hg38)
End
172120476/172151336 (Hg38)
Location type
Intron14
Target gene
DNM3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/6692; hsa-mir-1182/Downstream/3817034;
Nearest TSS
ENST00000473358/Upstream/6542; ENST00000491124/Downstream/227682;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/309151, chr1-CpG: 35/Downstream/292391
Upstream sequence
tttctttctgtttgttattaattattaatttaattacactgtgcttagagaatatattttgtattatttctattcttttaaatttattaaggtttgtttt
Downstream sequence
GAAGAATGCTGCCACACAAGGCCTATGACTCAATAAACCTTCTCCTCTTCAAGATCCTGCCCTGCAGGcccctctcttcccctcccctcccctccccttc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate