Basic Information
VIS ID
TVIS10018599
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1817
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37.55
Start
42072164/41845024 (Hg38)
End
42072164/41845024 (Hg38)
Nearest miRNA
hsa-mir-1301/Upstream/6373538; hsa-mir-10b/Downstream/5532651;
Nearest TSS
ENST00000437798/Upstream/1098537; ENST00000418836/Downstream/32050;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3570, chr2-CpG: 139/Downstream/202266
Nearby gene
LOC388942
Upstream sequence
tagatatcatacacagtatgctgtcagaccacagtagaattcaaatagaaatcaataacagaaatagaaacacactttaaccaatttaatagatgtcata
Downstream sequence
ctcgtgggcacaatctaatcagctgccaatgaatataaagcaggcagaaaaatgaagaggtgaggctggcctaacctcccagccttcatccttctcccac
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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