Basic Information
VIS ID
TVIS10018601
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1818
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37.55
Start
81372439/81145315 (Hg38)
End
81372439/81145315 (Hg38)
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/1278732; hsa-mir-10b/Downstream/4638285;
Nearest TSS
ENST00000437798/Upstream/275125; ENST00000448431/Downstream/321631;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/822642, chr2-CpG: 93/Downstream/48765
Nearby gene
LINC01815
Upstream sequence
cactcaaGGTAAggtggcacacacctataacttcagctactcaggaggctgaggcacaaggattgcttgagcccaggagttcaagttcagcctgggcaac
Downstream sequence
aaaatcgaaaacaaactagttacttcctagagatgatgaggctacaggtatttggtaaatacagctgttccaaatgggagaaattggccaaaacaaaggg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate