Basic Information
VIS ID
TVIS10018605
Fusion event
HBV-LINC01881 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1725
Integrated sequence
ACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTT| |TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37.55
Start
243055113/242112962 (Hg38)
End
243055113/242112962 (Hg38)
Location type
Intron2
Fragile sites / regions
FRA2J
Target gene
LINC01881
Nearest miRNA
hsa-mir-10b/Upstream/634980;
Nearest TSS
ENST00000437798/Upstream/24505;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/23551, None/Downstream
Upstream sequence
GGTAGCCGGTCACTGCACTCTCAGGCGGTGTCCACATGATGGTGACCTTCACGTCTGTCACTTCCACAAACTGCAGGTCCCTGGGAGAGGGCACTGTATC
Downstream sequence
TGTAAAAATAGTAGCCTAGTTGTCATTTGTGAGCCCAGGCTTGGTCCTCAAGTCTGACATAGACTCCCCAAGGCCCTAACGCTGAAGTTCTCTGAGCCCT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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