Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018606
Fusion event
HBV-P3H2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1820
Integrated sequence
TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTAT
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
End
189706832/189989043 (Hg38)
Location type
Intron12
Target gene
miRNAs that regulate target gene
hsa-mir-627-5p ; hsa-mir-3653-3p ; hsa-mir-570-3p ; hsa-mir-5197-3p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-6740-5p ; hsa-mir-6867-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-891b ; hsa-mir-203b-3p ; hsa-mir-3689d ; hsa-mir-6825-5p ; hsa-mir-6851-5p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-7854-3p
Nearest miRNA
hsa-let-7g/Upstream/159034; hsa-mir-3137/Downstream/5145463;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1041280, chr3-CpG: 99/Downstream/131248
Upstream sequence
GGCAAATCCCAGCATTTGCATGAAGACAGTGAGTAGTGCTGACAAACACCAGGCAACAGCTAGGGCCGCTTCTGATCTTTGTTCTTTTTTTATGCCATAG
Downstream sequence
AGACAAGAGCCAATACGTGTGTTCCTCCAGGTTGCTGAGTGCCCAAACGTCAACGTCACAGCCACAGTTACACAGGTCATTCCTCACCTCACCACACTGG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.