Basic Information
VIS ID
TVIS10018617
Fusion event
HBV-LOC101928304 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1625
Integrated sequence
GCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGA| |ACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTT
Host Sequence
Chromosome
chr6
Cytoband
q23.2
Reference genome
GRCh37.55
Start
134855206/134534068 (Hg38)
End
134855206/134534068 (Hg38)
Location type
Intron3
Target gene
LOC101928304
Nearest miRNA
hsa-mir-10398/Upstream/2418805; hsa-mir-1202/Downstream/445270;
Nearest TSS
ENST00000381078/Upstream/3062; ENST00000452888/Downstream/601;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/216185, chr6-CpG: 35/Downstream/520543
Upstream sequence
agatgaagacaaactaagaatttatttccaatttacctgtgataaaagaagcgccacagaaacttcaagcagagagaaacagtaaggataatctggaact
Downstream sequence
cttctacttaccaaggcctatctagctatagccaccactgagtggtgccaaaactgagtgcctgatctgttaacagcagagattgacagtgagctcctga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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