Basic Information
VIS ID
TVIS10018619
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1820
Integrated sequence
TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTAT
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37.55
Start
23934808/23895189 (Hg38)
End
23934808/23895189 (Hg38)
Nearest miRNA
hsa-mir-1183/Upstream/2424043; hsa-mir-10399/Downstream/2054730;
Nearest TSS
ENST00000635602/Upstream/142386; ENST00000407573/Downstream/2146;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/214131, chr7-CpG: 123/Downstream/388750
Nearby gene
STK31
Upstream sequence
tacataaactgtagctatattatacaatattacgcaacatttaaaaAAGAGGTATTgctaggtgccgtggctcatgtctgtaatcccagcactttgggag
Downstream sequence
CATTCTAATATAAAAAATGACCCTCTCCTTCCTGAATCTTTTTATTAGATGTTGACTAGATGCTGGCATTTCATTTATAAAAGTAAGCATGTCAAATGCC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate