Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018620
Fusion event
HBV-BBS9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
Start
End
33474813/33435201 (Hg38)
Location type
Intron18
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-4709-3p ; hsa-mir-3185 ; hsa-mir-3124-3p ; hsa-mir-676-5p ; hsa-mir-3121-5p ; hsa-mir-1264 ; hsa-mir-6875-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4778-3p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-1248 ; hsa-mir-5088-3p ; hsa-mir-28-3p ; hsa-mir-8084 ; hsa-mir-5582-3p
Nearest miRNA
hsa-mir-1183/Upstream/702124; hsa-mir-10399/Downstream/1505559;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/305570, chr7-CpG: 153/Downstream/468852
Upstream sequence
ATAGCAAAGCATTGGAGTGAAGTAGCTGATATGTATTGGATGACTTAGTTTCAAAAGCTGTTTTTCCTATAATACCGTAATTCCTTCCTCAAACGGAGGC
Downstream sequence
ACTGATGGTAAAAGGGAGGAAAAAGGAAGCATAGGGATTATCAGAATACTTGGAGTCATCAAAAATTCTATGTATAAAATTTACTGGCTATATGACCTTT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.