KIAA1217 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018633
Fusion event
HBV-KIAA1217 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1797
Integrated sequence
TTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT| |GGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTT
Host Sequence
Chromosome
chr10
Cytoband
p12.2
Reference genome
GRCh37.55
Start
24350435/24061506 (Hg38)
End
24350436/24061507 (Hg38)
Location type
Intron2
Target gene
KIAA1217
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-4286 ; hsa-mir-6507-3p
Nearest miRNA
hsa-mir-1265/Upstream/2564865; hsa-mir-107/Downstream/214178;
Nearest TSS
ENST00000439456/Upstream/19375; ENST00000635504/Downstream/147284;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/365457, chr10-CpG: 209/Downstream/661161
Upstream sequence
TAGGGGTCTATAACTGAATAACTAAAAAGTTATTCAGTTAGAATAGTTCAGTTAGTTATTATAACTAATCATAGTTATTTggtcaagcgcagtgactcac
Downstream sequence
gtgttactgtttagtgtcctttgttataagttggagaactctttagtatttcttgtaaggcaggtaagcggtgataaactctcagctctgtatgtcctga
Target sequence
t
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate