Basic Information
VIS ID
TVIS10018634
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
3214
Integrated sequence
AGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG| |
Host Sequence
Chromosome
chr11
Cytoband
p15.2
Reference genome
GRCh37.55
Start
15503189/15481643 (Hg38)
End
15503207/15481661 (Hg38)
Nearest miRNA
hsa-mir-210/Upstream/3317876; hsa-let-7a-2/Downstream/487872;
Nearest TSS
ENST00000527297/Upstream/246498; ENST00000527770/Downstream/71194;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/366644, chr11-CpG: 25/Downstream/168482
Nearby gene
LOC102724957
Upstream sequence
CTGGTATGTGCCTGCAGGCAGAGAGGGGAAGAGACAAGGGAAGCTGGAGAATTACTGTCCTTTAGAAATGGCACATGCTGTCCACCCTGTAGCCACGGAA
Downstream sequence
ctgattccAGCTGACACACTTCTTCCATATAACTTATTTTTCATTGTGTGCACCATGCTTCTTCCTGTCTCTGCTTTGTGCCTGCCGTTTACTGTGGGTG
Target sequence
cacaaaactcttcaagat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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