Basic Information
VIS ID
TVIS10018635
Fusion event
HBV-OR5AM1P integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1816
Integrated sequence
CTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCA| |TGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCC
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37.55
Start
56387989/56620513 (Hg38)
End
56387989/56620513 (Hg38)
Location type
Intronic
Target gene
OR5AM1P
Nearest miRNA
hsa-mir-129-2/Upstream/8523655; hsa-let-7a-2/Downstream/123360;
Nearest TSS
ENST00000527297/Upstream/5639; ENST00000624596/Downstream/21958;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/745869, chr11-CpG: 78/Downstream/703884
Nearby gene
OR5M1
Upstream sequence
ATTTTCCAAATAATTTGCAAAAATTAATTCAGGGAGCCTTCAGGAAAGTGCCTTCCGAACAGTCATCCTTCTTTTTTTTTTTTTTTTTTTCCAAAACAAA
Downstream sequence
gaaatggcttatcAGTGACTGTGCTCAGGAAACAATCCAGAGCCCCTCCTTCCTGGTCCATTGTTTGTTCCACAAAACCAGTATTTCCCAAGCTTGGGTC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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