Basic Information
VIS ID
TVIS10018638
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr13
Cytoband
q21.31
Reference genome
GRCh37.55
Start
64844808/64270676 (Hg38)
End
64844808/64270676 (Hg38)
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/3070796; hsa-mir-1267/Downstream/1695654;
Nearest TSS
ENST00000623511/Upstream/194665; ENST00000437777/Downstream/1595498;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/426130, chr13-CpG: 92/Downstream/2959700
Nearby gene
LOC102723968
Upstream sequence
aatctgatcagtgagatgccagtttttctttcttttttttttttttttgaaacagggtctcgttctgtcactgtggctgaagtgcagtgtcgtgatcatg
Downstream sequence
gttcactgcagacttgacctccctgggctcaagggatcgtcctacctcagcctcctaagaagctgagactataggcgtgcactaccacacctgacttaat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate