Basic Information
VIS ID
TVIS10018640
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1650
Integrated sequence
CCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGT| |CTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAG
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37.55
Start
26777072/26307866 (Hg38)
End
26777072/26307866 (Hg38)
Nearest miRNA
hsa-mir-208a/Upstream/2164301; hsa-mir-1185-1/Downstream/600776;
Nearest TSS
ENST00000550708/Upstream/164561; ENST00000547786/Downstream/287595;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/102594, chr14-CpG: 203/Downstream/2457817
Nearby gene
NOVA1
Upstream sequence
AAGCCAGAATTCCTCGGGGCTAACTCCCAGCTCCCCTAATTCCCCAGCTCTTTCTTCAGCATCAAAACCCCTTCCTTTCCTTTTAACTCTAACAATCTCG
Downstream sequence
cttctttttgttctttcagctctatattaacacatttgttactagttacttatatgtaatcatctctgtttgaaaaacaaagcattatttctcttttact
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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