VISDB Viral Integration Site DataBase

VIS ID

TVIS10018648

Fusion event

HBV-PSG4 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1398

End

1736

Integrated sequence

ACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTT

Chromosome

chr19

Cytoband

q13.31

Reference genome

Start

End

43699254/43195102 (Hg38)

Location type

Exon3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-19b-3p ; hsa-mir-4646-3p ; hsa-mir-578 ; hsa-mir-4433b-5p ; hsa-mir-7843-3p ; hsa-mir-6868-3p ; hsa-mir-642a-5p ; hsa-mir-4786-3p ; hsa-mir-3655 ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-6817-3p ; hsa-mir-1248 ; hsa-mir-6769b-3p ; hsa-mir-1237-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-7109-3p

Nearest miRNA

hsa-mir-10395/Upstream/843897; hsa-let-7e/Downstream/1458584;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/496941, chr19-CpG: 42/Downstream/212913

Upstream sequence

GCGTGGGTTCCTTGCCGCTGTCTGGGGTAGAGGAGAAGATGTTCAGCCTCCTCAAGAGAGCCAAAGTGCAGCTATTCAAGATCGATCAGCAGCAGCAGCA

Downstream sequence

TCCTGTTTTCAATGGGTCGCTTTACCCTGGGACTGACAGGGAGGCTCTGACCATTTAGCCACCAAATGTAGGTGTAGTTCTTACTCTTAGGTTCACAGGT