hsa-mir-6751-3p _LIHC.png
RNF24 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018649
Fusion event
HBV-RNF24 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1819
Integrated sequence
TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
End
3916585/3935938 (Hg38)
Location type
Intron2
Target gene
Nearest miRNA
hsa-mir-103a-2/Upstream/18367; hsa-mir-1-1/Downstream/3435670;
Upstream sequence
AAGTATCAGTAAGGTTTGGCAAACAGCCGTGGTATCAGAATCCAAACAGGTAATTAAAACAGATTTATTTCTGTCTTATGTGCCCATAGTAAAAACTGCT
Downstream sequence
CTCCTTTCTCCCTACTTGCTTCCCTGTCCATTCCCAAGGatcctggttcaggccatcaccatttctagcctggactgttgatggctttgctgttactagt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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