Basic Information
VIS ID
TVIS10018650
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1624
Integrated sequence
GGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTG| |AACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGT
Host Sequence
Chromosome
chrX
Cytoband
p22.31
Reference genome
GRCh37.55
Start
7485519/7567478 (Hg38)
End
7485519/7567478 (Hg38)
Nearest miRNA
hsa-mir-3690-1/Upstream/419541; hsa-let-7f-2/Downstream/559487;
Nearest TSS
ENST00000429181/Upstream/348022; ENST00000341408/Downstream/274784;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/419031, chrX-CpG: 49/Downstream/359558
Nearby gene
VCX
Upstream sequence
tctatagtacttaaagctataacacatagttaacattctattcagttattacttcttgtatatttgtaccaatagcatatcagctttttgaagacagaaa
Downstream sequence
tacaaagactgaccttccccgagcgacagagaattctcctgcctgtcagctttcaaactggggcatagactcttcctggttctgcagctgcctgccagcc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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