Basic Information
VIS ID
TVIS10018651
Fusion event
HBV-chrY integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chrY
Cytoband
q11.221
Reference genome
GRCh37.55
Start
15168301/13056387 (Hg38)
End
15168301/13056387 (Hg38)
Nearest miRNA
hsa-mir-3690-2/Upstream/8450159; hsa-mir-12120/Downstream/422790;
Nearest TSS
ENST00000430575/Upstream/140891; ENST00000284856/Downstream/423117;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/151000, chrY-CpG: 33/Downstream/422992
Nearby gene
DDX3Y
Upstream sequence
TTAGAGTTACCTAAATAAGTCAGCATTTAAACTTCTCCTAGTAAAAGCTTGCCGATCTGAATAATCCTCCTTTAAACACAATTTTTGATATGGTTAAGTT
Downstream sequence
tgggtcaaatggtatctgtgcctctaggtctttgaggaattgaacactgtcttccacaatggttgaactaatgtacattcccaccaacagtgtaaaagtg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate