VISDB Viral Integration Site DataBase

VIS ID

TVIS10018658

Fusion event

HBV-SORCS2 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1779

Integrated sequence

CAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGG| |AGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGC

Chromosome

chr4

Cytoband

p16.1

Reference genome

Start

End

7386652/7384925 (Hg38)

Location type

Intron1

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1274b ; hsa-mir-23b-3p ; hsa-mir-6818-5p ; hsa-mir-1273e ; hsa-mir-636 ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-766-5p ; hsa-mir-873-5p ; hsa-mir-205-3p ; hsa-mir-141-5p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-7111-5p ; hsa-mir-548l ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6752-3p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4779 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3692-3p ; hsa-mir-29b-2-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-642b-5p ; hsa-mir-6070 ; hsa-mir-671-3p ; hsa-mir-5088-3p ; hsa-mir-4453 ; hsa-mir-4538 ; hsa-mir-3157-5p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-4691-3p ; hsa-mir-1306-5p ; hsa-mir-6873-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-520f-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6800-3p ; hsa-mir-6853-3p ; hsa-mir-1206 ; hsa-mir-567

Nearest miRNA

hsa-mir-378d-1/Upstream/74401; hsa-mir-12113/Downstream/75103;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/191185, chr4-CpG: 45/Downstream/96890

Upstream sequence

TAAACAACTCATGATAACAATAACAACAGATGTGGTAAATTAATGACTTCCAAAGAACATTTGCCTGAAATTGCTTGTTTTTTTTTTCTTTGATTCATCT

Downstream sequence

GGCTCAGCTTCAGCAGAAGATTCTTAGAGGGAAAGGCCTGTACTCACTGCAGCTCTGATGGCTCCACTTTGGAGGGAGAGCCTTCAGGGATGCTCTGCGG