Basic Information
VIS ID
TVIS10018662
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1484
End
1683
Integrated sequence
TCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATG
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37.55
Start
83206383/82632248 (Hg38)
End
83206383/82632248 (Hg38)
Nearest miRNA
hsa-mir-1297/Upstream/4934132; hsa-mir-1267/Downstream/4986417;
Nearest TSS
ENST00000623511/Upstream/1381810; ENST00000446314/Downstream/1250145;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1976938, chr13-CpG: 18/Downstream/1247281
Nearby gene
SLITRK1
Upstream sequence
ataaattgggagctacacattctttgtctcagtaaaatgtataataaatatgtgtgtgcatgtacaaacaCTAGGGAAGAAGAAGAAATTATTTACTTGT
Downstream sequence
GGTGCTATATGCTAATTTTTTATTTTTTCTAAATACATAGGTGAAATGGTTTGGTATATTTTCTTTTGACCCTTCTGTGAAAAGCCAGGCCATGTGGTAC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate