Basic Information
VIS ID
TVIS10018664
Fusion event
HBV-LOC105370826 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1760
Integrated sequence
AGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGT| |TAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCT
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37.55
Start
53706590/53414393 (Hg38)
End
53706590/53414393 (Hg38)
Location type
Intronic
Target gene
LOC105370826
Nearest miRNA
hsa-mir-10393/Upstream/1137193; hsa-mir-11181/Downstream/1958547;
Nearest TSS
ENST00000557528/Upstream/298028; ENST00000561210/Downstream/126687;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/608114, chr15-CpG: 33/Downstream/345065
Nearby gene
WDR72
Upstream sequence
AAACTCAGGCTTAAGGTACAGCAAAGCCAGCCTTGGTGGAGAAGTGTGGGGTTGAAATATTTTGATAATTGATATTTTAATAGAAGCATTTCAGTAGTCA
Downstream sequence
TGCGCTGCCTGGAGCTGCTGCAGTGACTCAGATCAGGCAGGGACCGACCTTGAAGGTTTGGGGCtgtattagttttctgtggtgctcaaaacaaattgcc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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