Basic Information
VIS ID
TVIS10018672
Fusion event
HBV-LINC01054 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
452
Integrated sequence
CTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGA| |CTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCT
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37.55
Start
115096254/114330779 (Hg38)
End
115096254/114330779 (Hg38)
Location type
Intron2
Target gene
LINC01054
Nearest miRNA
hsa-mir-1267/Upstream/56871;
Nearest TSS
ENST00000623511/Upstream/8579; ENST00000446989/Downstream/3169;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/15889, None/Downstream
Upstream sequence
acgcttgtaatcccagcactttgggagaccagggcgggcggatcacgaggccaggagatcgagaccatcctggataacaaggtgaaaccccgtctctact
Downstream sequence
aaaaatacaaaaaattagccgggcgtggttgcagatgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate