Basic Information
VIS ID
TVIS10018673
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
2833
End
2949
Integrated sequence
GAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTT
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37.55
Start
28460502/27991296 (Hg38)
End
28460502/27991296 (Hg38)
Nearest miRNA
hsa-mir-208a/Upstream/358018; hsa-mir-1185-1/Downstream/3023350;
Nearest TSS
ENST00000550708/Upstream/357171; ENST00000548280/Downstream/326845;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1786024, chr14-CpG: 203/Downstream/774387
Nearby gene
MIR3171
Upstream sequence
CTGAAAATGCCCTTCACTACATGCTGCTGAGTGAAAAACAGGAGCATGTTTCAAAAAAGTATAGATTGACTTCATTGAAgaaaaaaacaattacagtgtc
Downstream sequence
catgccttttcgaggtttgatagctcatttatttttagtgctgaataatatactattgtatgaatatctcaccgtttgtttatccattcatctgttgaaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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