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Viral Integration Site DataBase
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TVIS10018677
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018677
Fusion event
HBV-ZNF516 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
109
Integrated sequence
ACCTTCCACCAAACTCTGCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCT| |CTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGG
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37.55
Start
74124932/76412976 (Hg38)
End
74124950/76412994 (Hg38)
Location type
Intron5
Target gene
ZNF516
miRNAs that regulate target gene
hsa-mir-186-5p
;
hsa-mir-432-3p
;
hsa-mir-1277-5p
;
hsa-mir-190a-3p
;
hsa-mir-5011-5p
;
hsa-mir-410-3p
;
hsa-mir-5692c
;
hsa-mir-5692b
;
hsa-mir-6739-3p
;
hsa-mir-4677-5p
;
hsa-mir-7156-5p
;
hsa-mir-4273
;
hsa-mir-489-3p
;
hsa-mir-4256
;
hsa-mir-3913-3p
;
hsa-mir-6719-3p
;
hsa-mir-4526
;
hsa-mir-3660
;
hsa-mir-6730-3p
;
hsa-mir-4286
;
hsa-mir-6729-3p
;
hsa-mir-2114-5p
;
hsa-mir-6873-3p
;
hsa-mir-6881-3p
;
hsa-mir-6780a-3p
;
hsa-mir-7111-3p
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-6769b-3p
;
hsa-mir-4723-3p
;
hsa-mir-3183
;
hsa-mir-1306-5p
;
hsa-mir-4699-3p
;
hsa-mir-575
;
hsa-mir-4676-5p
;
hsa-mir-6858-3p
;
hsa-mir-1266-5p
;
hsa-mir-1296-3p
;
hsa-mir-1908-5p
;
hsa-mir-211-3p
;
hsa-mir-24-3p
;
hsa-mir-3144-5p
;
hsa-mir-3179
;
hsa-mir-3180-3p
;
hsa-mir-3180
;
hsa-mir-3191-3p
;
hsa-mir-3196
;
hsa-mir-3202
;
hsa-mir-3612
;
hsa-mir-3934-3p
;
hsa-mir-4270
;
hsa-mir-4284
;
hsa-mir-4441
;
hsa-mir-4481
;
hsa-mir-4518
;
hsa-mir-4652-5p
;
hsa-mir-4706
;
hsa-mir-4745-5p
;
hsa-mir-4747-5p
;
hsa-mir-4749-5p
;
hsa-mir-491-5p
;
hsa-mir-5196-5p
;
hsa-mir-524-3p
;
hsa-mir-525-3p
;
hsa-mir-650
;
hsa-mir-663a
;
hsa-mir-6754-5p
;
hsa-mir-6777-5p
;
hsa-mir-6787-5p
;
hsa-mir-6797-5p
;
hsa-mir-6810-5p
;
hsa-mir-6816-5p
;
hsa-mir-6825-5p
;
hsa-mir-6889-5p
;
hsa-mir-9500
Nearest miRNA
hsa-mir-1-2/Upstream/3559594;
Nearest TSS
ENST00000575820/Upstream/32691;
ENST00000613453/Downstream/77785;
Nearest CpG islands
None/Target,
chr18-CpG: 67/Upstream/10141
,
chr18-CpG: 179/Downstream/28289
Upstream sequence
TGAGTGTGGCATCCTCCCTCCACCTCGCCCACCTCTGAGTCCCGCCATAACCTACCCGGAACCTACCAGAACCTAGCATCACTGCACGCCACCGCGGCCC
Downstream sequence
AGGCCCACTTCTCCTTAGACATGAGACACTGCACCTGCCAAGGTAATGCTGAAACCAAGGCCTCTGTGAGGAAGCGGGAAGCGGAGGCAGAAACGAAGTG
Target sequence
ACAGTGAGCCCTGCTCAG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Sample Information
×
Sample name
P176A
Sample type
Tumor
Gender
Female
CpG Island Information
×
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