hsa-mir-3202 _LIHC.png
hsa-mir-6780a-3p _LIHC.png
ZNF516 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018677
Fusion event
HBV-ZNF516 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
109
Integrated sequence
ACCTTCCACCAAACTCTGCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCT| |CTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGG
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
End
74124950/76412994 (Hg38)
Location type
Intron5
Target gene
Nearest miRNA
hsa-mir-1-2/Upstream/3559594;
Upstream sequence
TGAGTGTGGCATCCTCCCTCCACCTCGCCCACCTCTGAGTCCCGCCATAACCTACCCGGAACCTACCAGAACCTAGCATCACTGCACGCCACCGCGGCCC
Downstream sequence
AGGCCCACTTCTCCTTAGACATGAGACACTGCACCTGCCAAGGTAATGCTGAAACCAAGGCCTCTGTGAGGAAGCGGGAAGCGGAGGCAGAAACGAAGTG
Target sequence
ACAGTGAGCCCTGCTCAG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate