Basic Information
VIS ID
TVIS10018678
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr1
Cytoband
p32.2
Reference genome
GRCh37.55
Start
58785612/58319940 (Hg38)
End
58785612/58319940 (Hg38)
Fragile sites / regions
FRA1B
Nearest miRNA
hsa-mir-12136/Upstream/3094217; hsa-mir-101-1/Downstream/1413287;
Nearest TSS
ENST00000473358/Upstream/259801; ENST00000637377/Downstream/186259;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/69517, chr1-CpG: 61/Downstream/226309
Nearby gene
OMA1
Upstream sequence
TTGTCATTTAATCCTTGTACATAAATTGCACTGTTGTCAGAGTCTTCATCTGGATCTACAGGTGGGCCTAGATCAAGATCTGGTCCTTCATCCATGGGTC
Downstream sequence
CACCAGGCTTATTGAAGCCAACTTGCTCTCCAGCGCTGCCCATTCCACCGCATCCTCCTCCCCGCCCACCTCTGCTCATGCCTCCACGATCAAATCCCCC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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