VISDB Viral Integration Site DataBase

VIS ID

TVIS10018682

Fusion event

HBV-GLUL integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1825

Integrated sequence

TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA

Chromosome

chr1

Cytoband

q25.3

Reference genome

Start

End

182349429/182380294 (Hg38)

Location type

Exon1

Target gene

miRNAs that regulate target gene

hsa-mir-29a-3p ; hsa-mir-186-5p ; hsa-mir-183-5p ; hsa-mir-24-3p ; hsa-mir-320b ; hsa-mir-937-3p ; hsa-mir-877-3p ; hsa-mir-877-5p ; hsa-mir-423-5p ; hsa-mir-296-3p ; hsa-mir-125a-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-185-5p ; hsa-mir-149-5p ; hsa-mir-196a-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-6728-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-625-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5187-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-571 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-549a ; hsa-mir-3185 ; hsa-mir-3192-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4511 ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-4660 ; hsa-mir-1184 ; hsa-mir-6890-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4683 ; hsa-mir-4772-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-383-5p ; hsa-mir-6771-3p ; hsa-mir-665 ; hsa-mir-6516-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-4314 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-298 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-4649-3p ; hsa-mir-1298-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-495-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-744-3p ; hsa-mir-642a-5p ; hsa-mir-4653-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6514-5p

Nearest miRNA

hsa-mir-101-1/Upstream/1941903; hsa-mir-1182/Downstream/10336034;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/322917, chr1-CpG: 166/Downstream/10268

Upstream sequence

TAGGGCTCAGAGAACTTCAGCGTTAGGGCCTTGGGGAGTCTATGTCAGACTTGAGGACCAAGCCTGGGCTCACAAATGACAACTAGGCTACTATTTTTAC

Downstream sequence

TTTTTTGGGGttttgtttgttttgttttgtttaggcaaggtcttgatctgtcacccaggctggagtgcagtggtgcaatcacaattcactgcagcttcaa

Target sequence

G