Basic Information
VIS ID
TVIS10018684
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1572
Integrated sequence
CGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGC| |CGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGA
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
GRCh37.55
Start
184177107/183312379 (Hg38)
End
184177107/183312379 (Hg38)
Nearest miRNA
hsa-mir-10b/Upstream/2006727; hsa-mir-1244-1/Downstream/1066596;
Nearest TSS
ENST00000437798/Upstream/98060; ENST00000441026/Downstream/592150;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/51524, chr2-CpG: 72/Downstream/1285740
Nearby gene
NUP35
Upstream sequence
TAAATAACTCAGAGAACTGATCTATATAGGTGACAAATCAAAATGGATATTTGCATACAAAGAGAAGCAAATGATATGGAATACCATATCATATCCTCAT
Downstream sequence
agaatgaataATTATTTAATAAATTACCCAATAACATTTCCAAAAGGATTTGAAGCAAATGATCTTATGGCACTTCTGCAAACATGCAAAATGTAAGGAG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate