Basic Information
VIS ID
TVIS10018685
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1847
Integrated sequence
GAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTC| |TTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTA
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37.55
Start
6350719/6309032 (Hg38)
End
6350719/6309032 (Hg38)
Nearest miRNA
hsa-mir-4790/Upstream/1058777; hsa-let-7g/Downstream/3971319;
Nearest TSS
ENST00000440867/Upstream/160548; ENST00000414603/Downstream/181447;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1120527, chr3-CpG: 71/Downstream/552104
Nearby gene
GRM7-AS3
Upstream sequence
GTTCTGGCCACAAGTAAATTTTCCCTCATACAAATACACAAACTTAAAGGAAATATTAAATGCCAAATAACAATAGTTATCAGCCAATCTGCGATCCTCT
Downstream sequence
tgactaagtcctcaaaagtaattgcaacaaaacaaaaattgacaagcaggacctaattaaactatagagcttctgcacagcaaaagaaatgatcaacaga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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