hsa-mir-130b-3p _LIHC.png
PPARG _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018686
Fusion event
HBV-PPARG integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1810
Integrated sequence
CAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCA| |GCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACAT
Host Sequence
Chromosome
chr3
Cytoband
p25.2
Reference genome
GRCh37.55
Start
12332898/12291399 (Hg38)
End
12332898/12291399 (Hg38)
Location type
Intron1
Target gene
PPARG
miRNAs that regulate target gene
hsa-mir-20b-5p ; hsa-mir-27b-3p ; hsa-mir-138-5p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-20a-5p ; hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-27a-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-12127/Upstream/1896837; hsa-let-7g/Downstream/3204840;
Nearest TSS
ENST00000440867/Upstream/2288; ENST00000438682/Downstream/14374;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2565, chr3-CpG: 61/Downstream/192851
Nearest cancer related gene
PPARG(OG, No orient, 0)
Upstream sequence
caaaacttaataagaaataaaaagtctcaacagacctatgacaagtaaagatactgaatcagtaataaaaaatgtcccgacaaacaccagatggctttag
Downstream sequence
TTCAGTTAGTTTCATAGCGTTCTAAATCAAAAATTTAGATTTAAGATTATTTGAAATCTTCTTGGAAGTTCTTACTTACTGTTTGCGTTTTCTCAAAATA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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