Basic Information
VIS ID
TVIS10018690
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1797
Integrated sequence
TTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT| |GGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTT
Host Sequence
Chromosome
chr4
Cytoband
q34.3
Reference genome
GRCh37.55
Start
181977599/181056446 (Hg38)
End
181977603/181056450 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/6632582; hsa-mir-1305/Downstream/1112843;
Nearest TSS
ENST00000502981/Upstream/297408; ENST00000512480/Downstream/102699;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/996980, chr4-CpG: 20/Downstream/1084675
Nearby gene
LINC00290
Upstream sequence
TCCAAGGCCTCTGAATCATAGCACAGAGGATTGACCTGACAGAAGCCAGGTCTCCACTTGGGGCCCTGTCTGTTCCCACCCAAGGAAAGTCTCCACTTAC
Downstream sequence
TTATTGCTATGCATCAAGAATATACTTGCATTTTTTATAAATTCGAATGAAATCCATCACTTTAAGCAACTTGAACACTTTAAGCATTTAATGTTTTTCC
Target sequence
TTAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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