Basic Information
VIS ID
TVIS10018694
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1820
Integrated sequence
TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTAT
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
GRCh37.55
Start
125792188/125471042 (Hg38)
End
125792188/125471042 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/5455785; hsa-mir-1202/Downstream/1013589;
Nearest TSS
ENST00000381078/Upstream/25859; ENST00000423208/Downstream/203311;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/107323, chr6-CpG: 232/Downstream/276534
Nearby gene
HDDC2
Upstream sequence
GCTAAATTGTCCTGAAATCATCTGtgacatggtttgggtctgtgtccccaccaaatctcaggtgttcctgtaatccctaatgttggaggtggggcctggt
Downstream sequence
taaaactgctgaaaatcaaagacagaaacttcaggaagtagccagtgaaaaagagatatattatcaataaaagagcaacaagaaaatttctatttgacat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate