Basic Information
VIS ID
TVIS10018695
Fusion event
HBV-CTAGE13P integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1798
Integrated sequence
TGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTG| |GTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTG
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37.55
Start
168689964/168289284 (Hg38)
End
168689964/168289284 (Hg38)
Location type
Intronic
Target gene
CTAGE13P
Nearest miRNA
hsa-mir-10398/Upstream/1291372; hsa-mir-4644/Downstream/2041477;
Nearest TSS
ENST00000381078/Upstream/46270; ENST00000568306/Downstream/30426;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/3500, chr6-CpG: 27/Downstream/18174
Nearby gene
DACT2
Upstream sequence
TAACTCCCAAACCCCACATGTTCGACTGTTGTTTTTTTTTAAGAGACAAATTCTCActgggtgtggtggctcacacctgtaatcccagcactttgggagg
Downstream sequence
AGGGGTAGCCCTAGGGTCCTCCGTAGCGCCAAGGCTGCTCTGGCGGTTGCTGCAGTAACCCCAGCCACAACAAGTCGTGGACAACACGCAGCATTCCATC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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