ZNF804B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018699
Fusion event
HBV-ZNF804B integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37.55
Start
88391137/88761823 (Hg38)
End
88391137/88761823 (Hg38)
Location type
Intron1
Target gene
ZNF804B
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10525/Upstream/12846554; hsa-mir-10399/Downstream/3442192;
Nearest TSS
ENST00000635602/Upstream/2455; ENST00000611114/Downstream/33898;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1854, chr7-CpG: 98/Downstream/1356755
Upstream sequence
TGGGTTTGGCTCTAAGGATTCTTCTCCAGTGTGTTTATAAGATGGCAATTTAAACATATATACAGTGGAGTCACTAGAAAACAACATAGTGATTTTTCTA
Downstream sequence
TTCCCAAATCTGTAGGGCTTGCAGAAGAATTTCTGTTACATGGTCAAAAAGTGTCCTTTCTCTCCCACTTTGGTCAGTCATCTCCCAAGAGCCTGACTGA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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