Basic Information
VIS ID
TVIS10018704
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1797
Integrated sequence
TTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT| |GGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTT
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37.55
Start
122594577/119832299 (Hg38)
End
122594577/119832299 (Hg38)
Nearest miRNA
hsa-let-7a-1/Upstream/5622770; hsa-mir-12126/Downstream/412680;
Nearest TSS
ENST00000422679/Upstream/336924; ENST00000561476/Downstream/102754;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/462363, chr9-CpG: 40/Downstream/662460
Nearby gene
LINC01613
Upstream sequence
TAGAAAGGGATTTGGGTTAGTTGTGTTTCAGAGAGTGGCAGTTTTGAGCCACTTGTCAGAACGCTGTTCATGAGTCTGCTTAGAACCCAGAGCAGAATTT
Downstream sequence
TGGATTTGTGATAGAGAAACTTCCCATCAGTATCTGTTTTCTCATAAGCTCCAGACGTCTCCTCACAGACACCTTTCCTAGAAATGAACAAATCAAAAGG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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