hsa-mir-4659a-3p _LIHC.png
GYS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018708
Fusion event
HBV-GYS2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1809
Integrated sequence
TCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACC| |AGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACA
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
GRCh37.55
Start
21706013/21553079 (Hg38)
End
21706013/21553079 (Hg38)
Location type
Intron5
Target gene
GYS2
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-6794-3p ; hsa-mir-4423-3p
Nearest miRNA
hsa-mir-1244-3/Upstream/3879685; hsa-let-7i/Downstream/2659342;
Nearest TSS
ENST00000382841/Upstream/25127; ENST00000541860/Downstream/51768;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/25031, chr12-CpG: 21/Downstream/104475
Upstream sequence
tgtagagacagagtctccctatgttggccaggctgatctcaaactcctgggctcaagcaatcctcccaccccagcctcccaaagtgctgggattacaggt
Downstream sequence
AGGTGgaagaagagcccgaagaagaacctgaagagacagcagaagacacaacagaagacacagagcaagacgaagatgaagaaatggatgtgggaacaga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate