Basic Information
VIS ID
TVIS10018712
Fusion event
HBV-LOC107985064 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1819
Integrated sequence
TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
GRCh37.55
Start
38615081/40458829 (Hg38)
End
38615081/40458829 (Hg38)
Location type
Intronic
Target gene
LOC107985064
Nearest miRNA
hsa-mir-1180/Upstream/265166; hsa-mir-10226/Downstream/1058335;
Nearest TSS
ENST00000595228/Upstream/15368; ENST00000578280/Downstream/19819;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/14775, chr17-CpG: 69/Downstream/188863
Nearby gene
IGFBP4
Upstream sequence
GCATTTTGAAGGAATAGTTGCTAATTTTGAAGAATATTAGGTGTAAAAGCAAGAAATACAATGATCCTGAGGTGACACGCTTATGTTTTACTTTTAAACT
Downstream sequence
TTAAGTTTTAGGTTTCAAGTTTAGGGAAAGTATCTCTTTCCCTAAGGCATCTTTTTCAACCCCCTTGTCTCTAGTCCCCTTCCCGATGCTCTAGGCTTGC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate