DLGAP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018714
Fusion event
HBV-DLGAP1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1824
Integrated sequence
TTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAG
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37.55
Start
4325352/4325352 (Hg38)
End
4325352/4325352 (Hg38)
Location type
Intron11
Target gene
DLGAP1
Nearest miRNA
hsa-mir-6718/Upstream/439920; hsa-mir-1-2/Downstream/1515343;
Nearest TSS
ENST00000575820/Upstream/60719; ENST00000583985/Downstream/129670;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/445265, chr18-CpG: 169/Downstream/128617
Upstream sequence
TGAGTGTGGCATCCTCCCTCCACCTCGCCCACCTCTGAGTCCCGCCATAACCTACCCGGAACCTACCAGAACCTAGCATCACTGCACGCCACCGCGGCCC
Downstream sequence
tcagagatgatacaaacaaatgaaaaaacatcccatgctaatggataggaagaatcaatatcatcaaaatggccatatggccaaaaacaatttgcagatt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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