Basic Information
VIS ID
TVIS10018718
Fusion event
HBV-chr19 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1782
Integrated sequence
TGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGG| |CTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGT
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37.55
Start
31914959/31424053 (Hg38)
End
31914959/31424053 (Hg38)
Nearest miRNA
hsa-mir-10395/Upstream/11024699; hsa-let-7e/Downstream/3698647;
Nearest TSS
ENST00000633603/Upstream/2056; ENST00000587779/Downstream/41600;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/66750, chr19-CpG: 27/Downstream/800425
Nearby gene
TSHZ3
Upstream sequence
GAAAAAGCCCGGATTGCGGGCGTGGGTTCCTTGCCGCTGTCTGGGGTAGAGGAGAAGATGTTCAGCCTCCTCAAGAGAGCCAAAGTGCAGCTATTCAAGA
Downstream sequence
ATTTGTTTTTTAATCCTTGCAGCAATTTATTTGCTGAATATGCACATTTCTTCCTTGAAATTTCCTAGCTGTGGCCAAGGTTAACTGTATACAGACTCAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate