VISDB Viral Integration Site DataBase

VIS ID

TVIS10018730

Fusion event

HBV-DSTYK integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1737

End

1895

Integrated sequence

GGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTT

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

205125358/205156230 (Hg38)

Location type

Intron2

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-130b-3p ; hsa-mir-148a-3p ; hsa-mir-192-5p ; hsa-mir-93-5p ; hsa-mir-15a-5p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-6504-3p ; hsa-mir-8080 ; hsa-mir-627-3p ; hsa-mir-877-3p ; hsa-mir-544a ; hsa-mir-6878-3p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-6872-3p ; hsa-mir-4438 ; hsa-mir-6505-5p ; hsa-mir-5192 ; hsa-mir-4261 ; hsa-mir-875-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6882-5p ; hsa-mir-922 ; hsa-mir-3678-3p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-2467-3p ; hsa-mir-4645-3p ; hsa-mir-3919 ; hsa-mir-3123 ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-3127-5p ; hsa-mir-3918 ; hsa-mir-619-5p ; hsa-mir-5004-3p ; hsa-mir-1200 ; hsa-mir-496 ; hsa-mir-432-5p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-5089-5p ; hsa-mir-4279 ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-548q ; hsa-mir-6506-5p ; hsa-mir-1976 ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-562 ; hsa-mir-4326 ; hsa-mir-498 ; hsa-mir-6888-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-3120-5p ; hsa-mir-3653-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-5571-5p ; hsa-mir-6885-3p ; hsa-mir-29b-2-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-106a-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1304-3p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-3622b-5p ; hsa-mir-3664-5p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4639-3p ; hsa-mir-4663 ; hsa-mir-5186 ; hsa-mir-5197-5p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-6794-3p ; hsa-mir-7160-5p ; hsa-mir-8077

Nearest miRNA

hsa-mir-101-1/Upstream/3152994; hsa-mir-1182/Downstream/292072;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/86205, chr1-CpG: 95/Downstream/54605

Upstream sequence

AAATAATTACTTTATTTGGAAATATAGTATGAATTCATACCATTTTTATACTTATTTTTGAACACATGAATAAATATATCTATATTTTTGAAAATATATT

Downstream sequence

GACCTTTTAACCTTAGCCTGACAAGAAGCTTGTGTCCGCCTCCCTGTGTTAACTGTCTTTTTCCAGAATCCCAGGGTGTGTCAGCAGCAGAGTGTTTATT